Agent skill
cellxgene-census
Query the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data. Use when you need population-scale cell metadata, gene expression slices, Census summary counts, source H5AD URIs/downloads, embeddings, spatial Census data, or reference atlas comparisons across organisms, tissues, diseases, assays, and cell types. For analyzing your own local single-cell data use scanpy, anndata, or scvi-tools.
★ 38,487 stars MIT K-Dense-AI/scientific-agent-skills
Install this skill
This command installs the skill into the portable ~/.agents/skills directory. The homepage installer can generate the native path for your specific agent.
mkdir -p $HOME/.agents/skills/'cellxgene-census' && curl -fsSL 'https://raw.githubusercontent.com/K-Dense-AI/scientific-agent-skills/HEAD/skills/cellxgene-census/SKILL.md' -o $HOME/.agents/skills/'cellxgene-census'/SKILL.mdSkill details
- Repository
- K-Dense-AI/scientific-agent-skills
- SKILL.md path
- skills/cellxgene-census/SKILL.md
- Author
- K-Dense-AI
- Tags
- agent-skill